{"id":402215,"date":"2024-10-20T05:00:07","date_gmt":"2024-10-20T05:00:07","guid":{"rendered":"https:\/\/pdfstandards.shop\/product\/uncategorized\/bs-iso-44542022\/"},"modified":"2024-10-26T08:52:51","modified_gmt":"2024-10-26T08:52:51","slug":"bs-iso-44542022","status":"publish","type":"product","link":"https:\/\/pdfstandards.shop\/product\/publishers\/bsi\/bs-iso-44542022\/","title":{"rendered":"BS ISO 4454:2022"},"content":{"rendered":"

PDF Catalog<\/h4>\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
PDF Pages<\/th>\nPDF Title<\/th>\n<\/tr>\n
2<\/td>\nundefined <\/td>\n<\/tr>\n
10<\/td>\nForeword <\/td>\n<\/tr>\n
11<\/td>\nIntroduction <\/td>\n<\/tr>\n
13<\/td>\n1 Scope
2 Normative references
3 Terms and definitions <\/td>\n<\/tr>\n
16<\/td>\n4 Abbreviated terms <\/td>\n<\/tr>\n
17<\/td>\n5 Phenopackets Schema and Requirements
5.1 Phenopacket Schema <\/td>\n<\/tr>\n
23<\/td>\n5.2 Requirement Levels
5.2.1 General
5.2.2 Multiplicity <\/td>\n<\/tr>\n
24<\/td>\n5.3 Ontology Use
6 Phenopacket Schema Top-Level Elements
6.1 Phenopacket
6.1.1 General
6.1.2 id
6.1.3 subject <\/td>\n<\/tr>\n
25<\/td>\n6.1.4 phenotypic_features
6.1.5 measurements
6.1.6 biosamples
6.1.7 interpretation
6.1.8 diseases
6.1.9 medical_actions
6.1.10 files
6.1.11 meta_data
6.2 Family
6.2.1 General <\/td>\n<\/tr>\n
26<\/td>\n6.2.2 id
6.2.3 proband
6.2.4 relatives
6.2.5 pedigree
6.2.6 files
6.2.7 meta_data <\/td>\n<\/tr>\n
27<\/td>\n6.3 Cohort
6.3.1 General
6.3.2 id
6.3.3 description
6.3.4 members
6.3.5 files
6.3.6 meta_data
7 Phenopackets Building Blocks
7.1 General <\/td>\n<\/tr>\n
28<\/td>\n7.2 Age
7.3 AgeRange
7.4 Biosample
7.4.1 General <\/td>\n<\/tr>\n
30<\/td>\n7.4.2 id
7.4.3 individual_id
7.4.4 derived_from_id
7.4.5 description
7.4.6 sampled_tissue
7.4.7 sample_type
7.4.8 phenotypic_features
7.4.9 measurements <\/td>\n<\/tr>\n
31<\/td>\n7.4.10 taxonomy
7.4.11 time_at_collection
7.4.12 histological_diagnosis
7.4.13 tumor_progression
7.4.14 tumor_grade
7.4.15 pathological_stage
7.4.16 pathological_tnm_finding
7.4.17 diagnostic_markers
7.4.18 procedure
7.4.19 files <\/td>\n<\/tr>\n
32<\/td>\n7.4.20 material_sample
7.4.21 sample_processing
7.4.22 sample_storage
7.5 ComplexValue
7.5.1 General
7.5.2 typed_quantities <\/td>\n<\/tr>\n
33<\/td>\n7.6 Disease
7.6.1 General
7.6.2 term
7.6.3 excluded <\/td>\n<\/tr>\n
34<\/td>\n7.6.4 onset
7.6.5 resolution
7.6.6 disease_stage
7.6.7 clinical_tnm_finding
7.6.8 primary_site
7.6.9 laterality
7.7 DoseInterval
7.7.1 General <\/td>\n<\/tr>\n
35<\/td>\n7.7.2 quantity
7.7.3 schedule_frequency
7.7.4 interval
7.8 DrugType
7.8.1 General <\/td>\n<\/tr>\n
36<\/td>\n7.9 Evidence
7.9.1 General
7.9.2 evidence_code
7.9.3 Reference
7.10 ExternalReference
7.10.1 General <\/td>\n<\/tr>\n
37<\/td>\n7.10.2 id
7.10.3 reference
7.10.4 description
7.11 File
7.11.1 General <\/td>\n<\/tr>\n
38<\/td>\n7.11.2 uri
7.11.3 individual_to_file_identifiers
7.11.4 file_attributes
7.12 GeneDescriptor
7.12.1 General <\/td>\n<\/tr>\n
39<\/td>\n7.12.2 value_id <\/td>\n<\/tr>\n
40<\/td>\n7.12.3 symbol
7.12.4 description
7.12.5 alternate_ids
7.12.6 alternate_symbols
7.12.7 xrefs
7.13 GenomicInterpretation
7.13.1 General <\/td>\n<\/tr>\n
41<\/td>\n7.13.2 subject_or_biosample_id
7.13.3 interpretation_status
7.13.4 call
7.14 GestationalAge
7.14.1 General <\/td>\n<\/tr>\n
42<\/td>\n7.15 Individual
7.15.1 General
7.15.2 id <\/td>\n<\/tr>\n
43<\/td>\n7.15.3 alternate_ids
7.15.4 date_of_birth
7.15.5 time_at_last_encounter <\/td>\n<\/tr>\n
44<\/td>\n7.15.6 vital_status
7.15.7 sex
7.15.8 karyotypic_sex
7.15.9 gender
7.15.10 taxonomy
7.16 Interpretation
7.16.1 General <\/td>\n<\/tr>\n
45<\/td>\n7.16.2 id
7.16.3 progress_status <\/td>\n<\/tr>\n
46<\/td>\n7.16.4 diagnosis
7.16.5 summary
7.17 KaryotypicSex <\/td>\n<\/tr>\n
47<\/td>\n7.18 Measurement
7.18.1 General <\/td>\n<\/tr>\n
48<\/td>\n7.18.2 description
7.18.3 assay
7.18.4 value
7.18.5 time_observed
7.18.6 procedure
7.19 MedicalAction
7.19.1 General <\/td>\n<\/tr>\n
49<\/td>\n7.19.2 action
7.19.3 treatment_target
7.19.4 treatment_intent
7.19.5 response_to_treatment
7.19.6 adverse_events
7.19.7 treatment_termination_reason
7.20 MetaData
7.20.1 General <\/td>\n<\/tr>\n
50<\/td>\n7.20.2 created
7.20.3 created_by
7.20.4 submitted_by
7.20.5 resources <\/td>\n<\/tr>\n
51<\/td>\n7.20.6 updates
7.20.7 phenopacket_schema_version
7.20.8 external_references
7.21 OntologyClass
7.21.1 General
7.21.2 id
7.21.3 label <\/td>\n<\/tr>\n
52<\/td>\n7.22 Pedigree
7.22.1 General
7.22.2 persons <\/td>\n<\/tr>\n
54<\/td>\n7.23 PhenotypicFeature
7.23.1 General
7.23.2 description
7.23.3 type <\/td>\n<\/tr>\n
55<\/td>\n7.23.4 excluded
7.23.5 severity
7.23.6 modifiers
7.23.7 onset
7.23.8 resolution
7.23.9 evidence
7.24 Procedure
7.24.1 General <\/td>\n<\/tr>\n
56<\/td>\n7.24.2 code
7.24.3 body site
7.24.4 performed
7.25 Quantity
7.25.1 General <\/td>\n<\/tr>\n
57<\/td>\n7.25.2 unit
7.25.3 value
7.25.4 reference_range
7.26 RadiationTherapy
7.26.1 General
7.26.2 modality
7.26.3 body_site <\/td>\n<\/tr>\n
58<\/td>\n7.26.4 dosage
7.26.5 fractions
7.27 ReferenceRange
7.27.1 General
7.27.2 unit
7.27.3 low
7.27.4 high
7.28 Resource
7.28.1 General <\/td>\n<\/tr>\n
59<\/td>\n7.28.2 id <\/td>\n<\/tr>\n
60<\/td>\n7.28.3 name
7.28.4 url
7.28.5 version
7.28.6 namespace_prefix
7.28.7 iriPrefix
7.28.8 CURIE <\/td>\n<\/tr>\n
61<\/td>\n7.28.9 Identifier resolution
7.29 Sex
7.30 TherapeuticRegimen
7.30.1 General <\/td>\n<\/tr>\n
62<\/td>\n7.30.2 identifier
7.30.3 start_time
7.30.4 end_time
7.30.5 regimen_status
7.31 TimeElement
7.31.1 General <\/td>\n<\/tr>\n
63<\/td>\n7.31.2 gestational_age
7.31.3 age
7.31.4 age_range
7.31.5 ontology_class
7.31.6 timestamp
7.31.7 interval
7.32 TimeInterval
7.32.1 General <\/td>\n<\/tr>\n
64<\/td>\n7.32.2 start
7.32.3 end
7.33 Timestamp
7.34 Treatment
7.34.1 General <\/td>\n<\/tr>\n
66<\/td>\n7.34.2 agent
7.34.3 route_of_administration
7.34.4 dose_intervals
7.34.5 drug_type
7.34.6 cumulative_dose
7.35 Update
7.35.1 General <\/td>\n<\/tr>\n
67<\/td>\n7.35.2 timestamp
7.35.3 updated_by
7.35.4 comment
7.36 Value
7.36.1 General
7.36.2 value
7.37 VariationDescriptor
7.37.1 General <\/td>\n<\/tr>\n
70<\/td>\n7.37.2 id
7.37.3 variation
7.37.4 label
7.37.5 description
7.37.6 gene_context
7.37.7 expression
7.37.8 vcf_record <\/td>\n<\/tr>\n
71<\/td>\n7.37.9 xrefs
7.37.10 alternate_labels
7.37.11 extensions
7.37.12 molecule_context
7.37.13 structural_type <\/td>\n<\/tr>\n
72<\/td>\n7.37.14 vrs_ref_allele_seq
7.37.15 allelic_state
7.38 VariantInterpretation
7.38.1 General
7.38.2 acmg_pathogenicity_classification <\/td>\n<\/tr>\n
73<\/td>\n7.38.3 therapeutic_actionability
7.38.4 variant
7.39 VitalStatus
7.39.1 General
7.39.2 status <\/td>\n<\/tr>\n
74<\/td>\n7.39.3 time_of_death
7.39.4 cause_of_death
7.39.5 survival_time_in_days <\/td>\n<\/tr>\n
75<\/td>\nAnnex A (informative) Working with Phenopackets <\/td>\n<\/tr>\n
83<\/td>\nAnnex B (informative) Ontologies <\/td>\n<\/tr>\n
86<\/td>\nAnnex C (informative) Rare Disease Example <\/td>\n<\/tr>\n
89<\/td>\nAnnex D (informative) Cancer Example <\/td>\n<\/tr>\n
93<\/td>\nAnnex E (informative) COVID-19 Example <\/td>\n<\/tr>\n
98<\/td>\nBibliography <\/td>\n<\/tr>\n<\/table>\n","protected":false},"excerpt":{"rendered":"

Genomics informatics. Phenopackets: A format for phenotypic data exchange<\/b><\/p>\n\n\n\n\n
Published By<\/td>\nPublication Date<\/td>\nNumber of Pages<\/td>\n<\/tr>\n
BSI<\/b><\/a><\/td>\n2022<\/td>\n102<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n","protected":false},"featured_media":402222,"template":"","meta":{"rank_math_lock_modified_date":false,"ep_exclude_from_search":false},"product_cat":[704,2641],"product_tag":[],"class_list":{"0":"post-402215","1":"product","2":"type-product","3":"status-publish","4":"has-post-thumbnail","6":"product_cat-35-240-80","7":"product_cat-bsi","9":"first","10":"instock","11":"sold-individually","12":"shipping-taxable","13":"purchasable","14":"product-type-simple"},"_links":{"self":[{"href":"https:\/\/pdfstandards.shop\/wp-json\/wp\/v2\/product\/402215","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/pdfstandards.shop\/wp-json\/wp\/v2\/product"}],"about":[{"href":"https:\/\/pdfstandards.shop\/wp-json\/wp\/v2\/types\/product"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/pdfstandards.shop\/wp-json\/wp\/v2\/media\/402222"}],"wp:attachment":[{"href":"https:\/\/pdfstandards.shop\/wp-json\/wp\/v2\/media?parent=402215"}],"wp:term":[{"taxonomy":"product_cat","embeddable":true,"href":"https:\/\/pdfstandards.shop\/wp-json\/wp\/v2\/product_cat?post=402215"},{"taxonomy":"product_tag","embeddable":true,"href":"https:\/\/pdfstandards.shop\/wp-json\/wp\/v2\/product_tag?post=402215"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}